J3_5XYU_008

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GGGUUUG*CAG*CUUAUGUCC

Length

19 nucleotides

Bulged bases

5XYU|1|A|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYU|1|A|G|969
5XYU|1|A|G|970
5XYU|1|A|G|971
5XYU|1|A|U|972
5XYU|1|A|U|973
5XYU|1|A|U|974
5XYU|1|A|G|975
*
5XYU|1|A|C|1025
5XYU|1|A|A|1026
5XYU|1|A|G|1027
*
5XYU|1|A|C|1191
5XYU|1|A|U|1192
5XYU|1|A|U|1193
5XYU|1|A|A|1194
5XYU|1|A|U|1195
5XYU|1|A|G|1196
5XYU|1|A|U|1197
5XYU|1|A|C|1198
5XYU|1|A|C|1199

Current chains

Chain A

16S RNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19