J3_5Y88_003
3D structure
- PDB id
- 5Y88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- CAG*CCGUUUUACA*UGCCUUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 5Y88|1|D|C|85, 5Y88|1|D|U|89, 5Y88|1|D|U|90, 5Y88|1|D|A|91, 5Y88|1|D|C|92, 5Y88|1|F|U|16, 5Y88|1|F|U|18, 5Y88|1|F|U|19, 5Y88|1|F|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5Y88|1|D|C|61
5Y88|1|D|A|62
5Y88|1|D|G|63
*
5Y88|1|D|C|84
5Y88|1|D|C|85
5Y88|1|D|G|86
5Y88|1|D|U|87
5Y88|1|D|U|88
5Y88|1|D|U|89
5Y88|1|D|U|90
5Y88|1|D|A|91
5Y88|1|D|C|92
5Y88|1|D|A|93
*
5Y88|1|F|U|12
5Y88|1|F|G|13
5Y88|1|F|C|14
5Y88|1|F|C|15
5Y88|1|F|U|16
5Y88|1|F|U|17
5Y88|1|F|U|18
5Y88|1|F|U|19
5Y88|1|F|G|20
5Y88|1|F|G|21
Current chains
- Chain D
- U6 snRNA
- Chain F
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain I
- Pre-mRNA-splicing factor CLF1
- Chain J
- Pre-mRNA-splicing factor CEF1
- Chain K
- Pre-mRNA-splicing factor SYF2
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-splicing factor CWC15
- Chain Q
- Pre-mRNA-processing protein 45
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