J3_5YLZ_002
3D structure
- PDB id
- 5YLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAG*CCGUUUUACA*UGCCUUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 5YLZ|1|D|C|85, 5YLZ|1|D|U|89, 5YLZ|1|D|U|90, 5YLZ|1|D|A|91, 5YLZ|1|F|U|17, 5YLZ|1|F|U|18, 5YLZ|1|F|U|19, 5YLZ|1|F|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5YLZ|1|D|C|61
5YLZ|1|D|A|62
5YLZ|1|D|G|63
*
5YLZ|1|D|C|84
5YLZ|1|D|C|85
5YLZ|1|D|G|86
5YLZ|1|D|U|87
5YLZ|1|D|U|88
5YLZ|1|D|U|89
5YLZ|1|D|U|90
5YLZ|1|D|A|91
5YLZ|1|D|C|92
5YLZ|1|D|A|93
*
5YLZ|1|F|U|12
5YLZ|1|F|G|13
5YLZ|1|F|C|14
5YLZ|1|F|C|15
5YLZ|1|F|U|16
5YLZ|1|F|U|17
5YLZ|1|F|U|18
5YLZ|1|F|U|19
5YLZ|1|F|G|20
5YLZ|1|F|G|21
Current chains
- Chain D
- U6 snRNA
- Chain F
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- mRNA/intron lariat
- Chain I
- Pre-mRNA-splicing factor CLF1
- Chain J
- Pre-mRNA-splicing factor CEF1
- Chain K
- Pre-mRNA-splicing factor SYF2
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-splicing factor CWC15
- Chain Q
- Pre-mRNA-processing protein 45
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