J3_5ZEB_003

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

5ZEB|1|A|U|318, 5ZEB|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ZEB|1|A|G|317
5ZEB|1|A|U|318
5ZEB|1|A|G|319
*
5ZEB|1|A|C|457
5ZEB|1|A|G|458
5ZEB|1|A|A|459
5ZEB|1|A|G|460
5ZEB|1|A|U|461
5ZEB|1|A|A|462
5ZEB|1|A|G|463
*
5ZEB|1|A|U|487
5ZEB|1|A|G|488
5ZEB|1|A|A|489
5ZEB|1|A|A|490
5ZEB|1|A|U|491
5ZEB|1|A|C|492

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28