J3_5ZEB_016

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCC*GAUUGAU*AACCG

Length

15 nucleotides

Bulged bases

5ZEB|1|A|U|3054, 5ZEB|1|A|A|3056, 5ZEB|1|A|C|3105, 5ZEB|1|A|C|3106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ZEB|1|A|C|3035
5ZEB|1|A|C|3036
5ZEB|1|A|C|3037
*
5ZEB|1|A|G|3051
5ZEB|1|A|A|3052
5ZEB|1|A|U|3053
5ZEB|1|A|U|3054
5ZEB|1|A|G|3055
5ZEB|1|A|A|3056
5ZEB|1|A|U|3057
*
5ZEB|1|A|A|3103
5ZEB|1|A|A|3104
5ZEB|1|A|C|3105
5ZEB|1|A|C|3106
5ZEB|1|A|G|3107

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17