J3_5ZEP_005

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

5ZEP|1|A|U|801, 5ZEP|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEP_005 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0838

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5ZEP|1|A|U|798
5ZEP|1|A|G|799
5ZEP|1|A|A|800
5ZEP|1|A|U|801
5ZEP|1|A|C|802
5ZEP|1|A|U|803
5ZEP|1|A|A|804
*
5ZEP|1|A|U|888
5ZEP|1|A|A|889
5ZEP|1|A|G|890
*
5ZEP|1|A|C|906
5ZEP|1|A|A|907
5ZEP|1|A|A|908
5ZEP|1|A|A|909

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2