J3_5ZEP_006
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_006 not in the Motif Atlas
- Homologous match to J3_7RQB_005
- Geometric discrepancy: 0.0794
- The information below is about J3_7RQB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.4
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5ZEP|1|A|C|813
5ZEP|1|A|A|814
5ZEP|1|A|G|815
*
5ZEP|1|A|C|847
5ZEP|1|A|G|848
5ZEP|1|A|A|849
5ZEP|1|A|A|850
5ZEP|1|A|C|851
*
5ZEP|1|A|G|875
5ZEP|1|A|A|876
5ZEP|1|A|U|877
5ZEP|1|A|G|878
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: