J3_5ZEP_012

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEP_012 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2541

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

5ZEP|1|A|U|1646
5ZEP|1|A|G|1647
5ZEP|1|A|A|1648
5ZEP|1|A|C|1649
5ZEP|1|A|G|1650
*
5ZEP|1|A|C|1784
5ZEP|1|A|C|1785
*
5ZEP|1|A|G|1788
5ZEP|1|A|A|1789
5ZEP|1|A|A|1790
5ZEP|1|A|A|1791
5ZEP|1|A|A|1792
5ZEP|1|A|G|1793

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2