J3_5ZEP_023
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 5ZEP|1|a|A|957, 5ZEP|1|a|G|958, 5ZEP|1|a|A|960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_023 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0982
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5ZEP|1|a|A|937
5ZEP|1|a|U|938
5ZEP|1|a|U|939
5ZEP|1|a|A|940
5ZEP|1|a|A|941
5ZEP|1|a|U|942
5ZEP|1|a|U|943
5ZEP|1|a|C|944
*
5ZEP|1|a|G|955
5ZEP|1|a|A|956
5ZEP|1|a|A|957
5ZEP|1|a|G|958
5ZEP|1|a|A|959
5ZEP|1|a|A|960
5ZEP|1|a|C|961
5ZEP|1|a|C|962
5ZEP|1|a|U|963
5ZEP|1|a|U|964
5ZEP|1|a|A|965
5ZEP|1|a|C|966
*
5ZEP|1|a|G|1202
5ZEP|1|a|G|1203
5ZEP|1|a|C|1204
5ZEP|1|a|U|1205
5ZEP|1|a|U|1206
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
- Chain x
- Ribosome hibernation promoting factor
Coloring options: