J3_5ZEP_028
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 5ZEP|1|a|U|1164
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_028 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.1876
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5ZEP|1|a|U|1096
5ZEP|1|a|G|1097
5ZEP|1|a|U|1098
*
5ZEP|1|a|A|1136
5ZEP|1|a|G|1137
5ZEP|1|a|A|1138
5ZEP|1|a|C|1139
*
5ZEP|1|a|G|1162
5ZEP|1|a|G|1163
5ZEP|1|a|U|1164
5ZEP|1|a|G|1165
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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