J3_5ZEP_034
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUCCAUAGCGG*UGCCAGCGCCGAUGAUACUAC*GGGUGGAAAAGUAGGACAC
- Length
- 52 nucleotides
- Bulged bases
- 5ZEP|1|B|C|12, 5ZEP|1|B|C|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ZEP|1|B|G|9
5ZEP|1|B|G|10
5ZEP|1|B|U|11
5ZEP|1|B|C|12
5ZEP|1|B|C|13
5ZEP|1|B|A|14
5ZEP|1|B|U|15
5ZEP|1|B|A|16
5ZEP|1|B|G|17
5ZEP|1|B|C|18
5ZEP|1|B|G|19
5ZEP|1|B|G|20
*
5ZEP|1|B|U|63
5ZEP|1|B|G|64
5ZEP|1|B|C|65
5ZEP|1|B|C|66
5ZEP|1|B|A|67
5ZEP|1|B|G|68
5ZEP|1|B|C|69
5ZEP|1|B|G|70
5ZEP|1|B|C|71
5ZEP|1|B|C|72
5ZEP|1|B|G|73
5ZEP|1|B|A|74
5ZEP|1|B|U|75
5ZEP|1|B|G|76
5ZEP|1|B|A|77
5ZEP|1|B|U|78
5ZEP|1|B|A|79
5ZEP|1|B|C|80
5ZEP|1|B|U|81
5ZEP|1|B|A|82
5ZEP|1|B|C|83
*
5ZEP|1|B|G|90
5ZEP|1|B|G|91
5ZEP|1|B|G|92
5ZEP|1|B|U|93
5ZEP|1|B|G|94
5ZEP|1|B|G|95
5ZEP|1|B|A|96
5ZEP|1|B|A|97
5ZEP|1|B|A|98
5ZEP|1|B|A|99
5ZEP|1|B|G|100
5ZEP|1|B|U|101
5ZEP|1|B|A|102
5ZEP|1|B|G|103
5ZEP|1|B|G|104
5ZEP|1|B|A|105
5ZEP|1|B|C|106
5ZEP|1|B|A|107
5ZEP|1|B|C|108
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain P
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L25
- Chain X
- 50S ribosomal protein L27
- Chain v
- 50S ribosomal protein L30
Coloring options: