J3_5ZET_005

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

5ZET|1|A|U|801, 5ZET|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZET_005 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0838

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5ZET|1|A|U|798
5ZET|1|A|G|799
5ZET|1|A|A|800
5ZET|1|A|U|801
5ZET|1|A|C|802
5ZET|1|A|U|803
5ZET|1|A|A|804
*
5ZET|1|A|U|888
5ZET|1|A|A|889
5ZET|1|A|G|890
*
5ZET|1|A|C|906
5ZET|1|A|A|907
5ZET|1|A|A|908
5ZET|1|A|A|909

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain C

50S ribosomal protein L2