J3_6AHD_001
3D structure
- PDB id
- 6AHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUGG*CAGUA*UUAUU
- Length
- 14 nucleotides
- Bulged bases
- 6AHD|1|I|U|19, 6AHD|1|I|U|53, 6AHD|1|I|A|54
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6AHD|1|F|A|56
6AHD|1|F|U|57
6AHD|1|F|G|58
6AHD|1|F|G|59
*
6AHD|1|I|C|16
6AHD|1|I|A|17
6AHD|1|I|G|18
6AHD|1|I|U|19
6AHD|1|I|A|20
*
6AHD|1|I|U|52
6AHD|1|I|U|53
6AHD|1|I|A|54
6AHD|1|I|U|55
6AHD|1|I|U|56
Current chains
- Chain F
- U6snRNA
- Chain I
- U4snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain J
- U4/U6 small nuclear ribonucleoprotein Prp3
- Chain L
- U4/U6 small nuclear ribonucleoprotein Prp31
- Chain N
- Pre-mRNA-processing factor 6
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