J3_6AWB_001

3D structure

PDB id

6AWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWB_001 not in the Motif Atlas

Homologous match to J3_6CZR_015

Geometric discrepancy: 0.5089

The information below is about J3_6CZR_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6AWB|1|A|G|46
6AWB|1|A|C|47
*
6AWB|1|A|G|361
6AWB|1|A|G|362
6AWB|1|A|A|363
6AWB|1|A|A|364
6AWB|1|A|U|365
6AWB|1|A|A|366
6AWB|1|A|U|367
*
6AWB|1|A|A|393
6AWB|1|A|G|394
6AWB|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12

Chain S

30S ribosomal protein S16