J3_6AWB_010

3D structure

PDB id

6AWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6AWB|1|A|U|1212, 6AWB|1|A|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWB_010 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2639

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6AWB|1|A|C|990
6AWB|1|A|U|991
6AWB|1|A|U|992
6AWB|1|A|G|993
6AWB|1|A|A|994
6AWB|1|A|C|995
6AWB|1|A|A|996
6AWB|1|A|U|997
*
6AWB|1|A|A|1044
6AWB|1|A|C|1045
6AWB|1|A|A|1046
6AWB|1|A|G|1047
*
6AWB|1|A|C|1210
6AWB|1|A|U|1211
6AWB|1|A|U|1212
6AWB|1|A|A|1213
6AWB|1|A|C|1214
6AWB|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S14