J3_6AWB_014
3D structure
- PDB id
- 6AWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 6AWB|1|A|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AWB_014 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.219
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6AWB|1|A|U|1116
6AWB|1|A|A|1117
6AWB|1|A|U|1118
*
6AWB|1|A|A|1155
6AWB|1|A|G|1156
6AWB|1|A|A|1157
6AWB|1|A|C|1158
6AWB|1|A|U|1159
6AWB|1|A|G|1160
6AWB|1|A|C|1161
*
6AWB|1|A|G|1175
6AWB|1|A|A|1176
6AWB|1|A|G|1177
6AWB|1|A|G|1178
6AWB|1|A|A|1179
6AWB|1|A|A|1180
6AWB|1|A|G|1181
6AWB|1|A|G|1182
6AWB|1|A|U|1183
6AWB|1|A|G|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 04
- DNA-directed RNA polymerase subunit beta'
- Chain E
- 30S ribosomal protein S2
- Chain L
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S10
- Chain Q
- 30S ribosomal protein S14
Coloring options: