J3_6BOK_042

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOK_042 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0727

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6BOK|1|EB|C|698
6BOK|1|EB|A|699
6BOK|1|EB|G|700
*
6BOK|1|EB|C|732
6BOK|1|EB|G|733
6BOK|1|EB|A|734
6BOK|1|EB|A|735
6BOK|1|EB|C|736
*
6BOK|1|EB|G|760
6BOK|1|EB|A|761
6BOK|1|EB|U|762
6BOK|1|EB|G|763

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain HB

50S ribosomal protein L2