J3_6BU8_029

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6BU8|1|01|U|321, 6BU8|1|01|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BU8_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1673

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6BU8|1|01|G|297
6BU8|1|01|G|298
6BU8|1|01|A|299
6BU8|1|01|A|300
6BU8|1|01|G|301
*
6BU8|1|01|C|316
6BU8|1|01|G|317
6BU8|1|01|C|318
6BU8|1|01|G|319
6BU8|1|01|A|320
6BU8|1|01|U|321
6BU8|1|01|A|322
6BU8|1|01|C|323
6BU8|1|01|A|324
6BU8|1|01|G|325
*
6BU8|1|01|C|337
6BU8|1|01|G|338
6BU8|1|01|U|339
6BU8|1|01|A|340
6BU8|1|01|C|341

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 23

50S ribosomal protein L24