J3_6BUW_002

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BUW_002 not in the Motif Atlas

Geometric match to J3_5J7L_002

Geometric discrepancy: 0.1192

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6BUW|1|QA|C|586
6BUW|1|QA|G|587
6BUW|1|QA|G|588
*
6BUW|1|QA|C|651
6BUW|1|QA|U|652
6BUW|1|QA|A|653
6BUW|1|QA|G|654
*
6BUW|1|QA|C|754
6BUW|1|QA|G|755

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QH

30S ribosomal protein S8

Chain QL

30S ribosomal protein S12

Chain QO

30S ribosomal protein S15

Chain QQ

30S ribosomal protein S17