J3_6C0F_005

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

6C0F|1|1|A|3316

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C0F|1|1|C|3298
6C0F|1|1|A|3299
6C0F|1|1|U|3300
*
6C0F|1|1|A|3314
6C0F|1|1|G|3315
6C0F|1|1|A|3316
6C0F|1|1|U|3317
6C0F|1|1|G|3318
*
6C0F|1|1|C|3388
6C0F|1|1|U|3389
6C0F|1|1|G|3390

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain v

Ribosome biogenesis protein SSF1