J3_6C4H_001

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU(2MG)C*GCCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6C4H|1|A|U|1971

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C4H|1|A|C|1833
6C4H|1|A|U|1834
6C4H|1|A|2MG|1835
6C4H|1|A|C|1836
*
6C4H|1|A|G|1904
6C4H|1|A|C|1905
6C4H|1|A|C|1925
6C4H|1|A|U|1926
6C4H|1|A|A|1927
6C4H|1|A|A|1928
6C4H|1|A|G|1929
6C4H|1|A|G|1930
6C4H|1|A|U|1931
6C4H|1|A|A|1932
6C4H|1|A|G|1933
*
6C4H|1|A|C|1967
6C4H|1|A|G|1968
6C4H|1|A|A|1969
6C4H|1|A|A|1970
6C4H|1|A|U|1971
6C4H|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2