J3_6C4I_002

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

6C4I|1|A|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C4I_002 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0599

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6C4I|1|A|A|56
6C4I|1|A|C|57
*
6C4I|1|A|G|70
6C4I|1|A|A|71
6C4I|1|A|U|72
6C4I|1|A|A|73
6C4I|1|A|A|74
6C4I|1|A|G|75
6C4I|1|A|C|76
*
6C4I|1|A|G|110
6C4I|1|A|A|111
6C4I|1|A|U|112
6C4I|1|A|U|113
6C4I|1|A|U|114

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain U

50S ribosomal protein L23

Chain Z

50S ribosomal protein L29