J3_6C4I_003

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6C4I|1|A|U|686, 6C4I|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C4I_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0651

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6C4I|1|A|U|683
6C4I|1|A|G|684
6C4I|1|A|A|685
6C4I|1|A|U|686
6C4I|1|A|C|687
6C4I|1|A|U|688
6C4I|1|A|A|689
*
6C4I|1|A|U|773
6C4I|1|A|G|774
6C4I|1|A|G|775
*
6C4I|1|A|C|791
6C4I|1|A|A|792
6C4I|1|A|A|793
6C4I|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain C

50S ribosomal protein L2