J3_6C4I_004

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C4I_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0696

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6C4I|1|A|C|698
6C4I|1|A|A|699
6C4I|1|A|G|700
*
6C4I|1|A|C|732
6C4I|1|A|G|733
6C4I|1|A|A|734
6C4I|1|A|A|735
6C4I|1|A|C|736
*
6C4I|1|A|G|760
6C4I|1|A|A|761
6C4I|1|A|U|762
6C4I|1|A|G|763

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2