J3_6C4I_035

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6C4I|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C4I_035 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1129

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6C4I|1|a|C|990
6C4I|1|a|U|991
6C4I|1|a|U|992
6C4I|1|a|G|993
6C4I|1|a|A|994
6C4I|1|a|C|995
6C4I|1|a|A|996
6C4I|1|a|U|997
*
6C4I|1|a|A|1044
6C4I|1|a|C|1045
6C4I|1|a|A|1046
6C4I|1|a|G|1047
*
6C4I|1|a|C|1210
6C4I|1|a|U|1211
6C4I|1|a|U|1212
6C4I|1|a|A|1213
6C4I|1|a|C|1214
6C4I|1|a|G|1215

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14

Chain v

Peptide chain release factor 2