J3_6C5L_007
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6C5L|1|AA|A|975, 6C5L|1|AA|G|976, 6C5L|1|AA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6C5L_007 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1262
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6C5L|1|AA|U|955
6C5L|1|AA|U|956
6C5L|1|AA|U|957
6C5L|1|AA|A|958
6C5L|1|AA|A|959
6C5L|1|AA|U|960
6C5L|1|AA|U|961
6C5L|1|AA|C|962
*
6C5L|1|AA|G|973
6C5L|1|AA|A|974
6C5L|1|AA|A|975
6C5L|1|AA|G|976
6C5L|1|AA|A|977
6C5L|1|AA|A|978
6C5L|1|AA|C|979
6C5L|1|AA|C|980
6C5L|1|AA|U|981
6C5L|1|AA|U|982
6C5L|1|AA|A|983
6C5L|1|AA|C|984
*
6C5L|1|AA|G|1221
6C5L|1|AA|G|1222
6C5L|1|AA|C|1223
6C5L|1|AA|G|1224
6C5L|1|AA|A|1225
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AJ
- 30S ribosomal protein S10
- Chain AM
- 30S ribosomal protein S13
- Chain AN
- 30S ribosomal protein S14 type Z
- Chain AS
- 30S ribosomal protein S19
- Chain AY
- Peptide chain release factor 2
Coloring options: