J3_6C5L_011

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

6C5L|1|AA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|AA|C|1116
6C5L|1|AA|G|1117
6C5L|1|AA|C|1118
*
6C5L|1|AA|G|1155
6C5L|1|AA|G|1156
6C5L|1|AA|A|1157
6C5L|1|AA|C|1158
6C5L|1|AA|U|1159
6C5L|1|AA|G|1160
6C5L|1|AA|C|1161
*
6C5L|1|AA|G|1175
6C5L|1|AA|A|1176
6C5L|1|AA|G|1177
6C5L|1|AA|G|1178
6C5L|1|AA|A|1179
6C5L|1|AA|A|1180
6C5L|1|AA|G|1181
6C5L|1|AA|G|1182
6C5L|1|AA|A|1183
6C5L|1|AA|G|1184

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z