J3_6C5L_018

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGGUUG*CAUCCUUUAAAGAGUG*CUCAC

Length

29 nucleotides

Bulged bases

6C5L|1|BA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|BA|G|1055
6C5L|1|BA|G|1056
6C5L|1|BA|A|1057
6C5L|1|BA|G|1058
6C5L|1|BA|G|1059
6C5L|1|BA|U|1060
6C5L|1|BA|U|1061
6C5L|1|BA|G|1062
*
6C5L|1|BA|C|1076
6C5L|1|BA|A|1077
6C5L|1|BA|U|1078
6C5L|1|BA|C|1079
6C5L|1|BA|C|1080
6C5L|1|BA|U|1081
6C5L|1|BA|U|1082
6C5L|1|BA|U|1083
6C5L|1|BA|A|1084
6C5L|1|BA|A|1085
6C5L|1|BA|A|1086
6C5L|1|BA|G|1087
6C5L|1|BA|A|1088
6C5L|1|BA|G|1089
6C5L|1|BA|U|1090
6C5L|1|BA|G|1091
*
6C5L|1|BA|C|1100
6C5L|1|BA|U|1101
6C5L|1|BA|C|1102
6C5L|1|BA|A|1103
6C5L|1|BA|C|1104

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BJ

50S ribosomal protein L10

Chain BK

50S ribosomal protein L11

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L25