J3_6C5L_020

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6C5L|1|BA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_020 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1106

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6C5L|1|BA|C|1306
6C5L|1|BA|A|1307
6C5L|1|BA|A|1308
6C5L|1|BA|G|1309
*
6C5L|1|BA|C|1605
6C5L|1|BA|G|1606
6C5L|1|BA|C|1607
6C5L|1|BA|A|1608
6C5L|1|BA|A|1609
6C5L|1|BA|A|1610
6C5L|1|BA|C|1611
*
6C5L|1|BA|G|1620
6C5L|1|BA|U|1621
6C5L|1|BA|G|1622

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34