J3_6C5L_026

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAUAG*CGC*GUCG

Length

13 nucleotides

Bulged bases

6C5L|1|BB|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|BB|C|11
6C5L|1|BB|C|12
6C5L|1|BB|A|13
6C5L|1|BB|U|14
6C5L|1|BB|A|15
6C5L|1|BB|G|16
*
6C5L|1|BB|C|68
6C5L|1|BB|G|69
6C5L|1|BB|C|70
*
6C5L|1|BB|G|107
6C5L|1|BB|U|108
6C5L|1|BB|C|109
6C5L|1|BB|G|110

Current chains

Chain BB

5S rRNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BZ

50S ribosomal protein L25