J3_6C5L_028

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

6C5L|1|CA|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_028 not in the Motif Atlas

Homologous match to J3_6CZR_016

Geometric discrepancy: 0.2167

The information below is about J3_6CZR_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.4

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6C5L|1|CA|C|586
6C5L|1|CA|G|587
6C5L|1|CA|G|588
*
6C5L|1|CA|C|651
6C5L|1|CA|U|652
6C5L|1|CA|A|653
6C5L|1|CA|G|654
*
6C5L|1|CA|C|754
6C5L|1|CA|G|755

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CL

30S ribosomal protein S12

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17