J3_6C5L_042

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_042 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0998

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6C5L|1|DA|C|698
6C5L|1|DA|A|699
6C5L|1|DA|G|700
*
6C5L|1|DA|C|732
6C5L|1|DA|G|733
6C5L|1|DA|A|734
6C5L|1|DA|A|735
6C5L|1|DA|C|736
*
6C5L|1|DA|G|760
6C5L|1|DA|A|761
6C5L|1|DA|U|762
6C5L|1|DA|G|763

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L2