J3_6C5L_051

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

6C5L|1|DB|U|14, 6C5L|1|DB|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_051 not in the Motif Atlas

Homologous match to J3_7RQB_015

Geometric discrepancy: 0.2093

The information below is about J3_7RQB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08462.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6C5L|1|DB|C|11
6C5L|1|DB|C|12
6C5L|1|DB|A|13
6C5L|1|DB|U|14
6C5L|1|DB|A|15
6C5L|1|DB|G|16
*
6C5L|1|DB|C|68
6C5L|1|DB|G|69
*
6C5L|1|DB|U|108
6C5L|1|DB|C|109
6C5L|1|DB|G|110

Current chains

Chain DB

5S rRNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DZ

50S ribosomal protein L25