J3_6C5L_055

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAUG*CACAG*CUUACG

Length

20 nucleotides

Bulged bases

6C5L|1|AA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|AA|C|990
6C5L|1|AA|U|991
6C5L|1|AA|U|992
6C5L|1|AA|G|993
6C5L|1|AA|A|994
6C5L|1|AA|C|995
6C5L|1|AA|A|996
6C5L|1|AA|U|997
6C5L|1|AA|G|998
*
6C5L|1|AA|C|1043
6C5L|1|AA|A|1044
6C5L|1|AA|C|1045
6C5L|1|AA|A|1046
6C5L|1|AA|G|1047
*
6C5L|1|AA|C|1210
6C5L|1|AA|U|1211
6C5L|1|AA|U|1212
6C5L|1|AA|A|1213
6C5L|1|AA|C|1214
6C5L|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AN

30S ribosomal protein S14 type Z

Chain AY

Peptide chain release factor 2

Chain DA

Large subunit ribosomal RNA; LSU rRNA