J3_6C5L_069

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|CA|U|943
6C5L|1|CA|G|944
6C5L|1|CA|G|945
6C5L|1|CA|A|946
6C5L|1|CA|G|947
*
6C5L|1|CA|C|1234
6C5L|1|CA|U|1235
6C5L|1|CA|A|1236
6C5L|1|CA|C|1237
*
6C5L|1|CA|G|1337
6C5L|1|CA|G|1338
6C5L|1|CA|A|1339
6C5L|1|CA|A|1340

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CU

30S ribosomal protein Thx

Chain CV

Transfer RNA; tRNA

Chain CW

Transfer RNA; tRNA