3D structure

PDB id
6CAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGG*CUAG*CG
Length
9 nucleotides
Bulged bases
6CAE|1|1a|A|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CAE_017 not in the Motif Atlas
Homologous match to J3_6CZR_016
Geometric discrepancy: 0.1383
The information below is about J3_6CZR_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.4
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
6

Unit IDs

6CAE|1|1a|C|586
6CAE|1|1a|G|587
6CAE|1|1a|G|588
*
6CAE|1|1a|C|651
6CAE|1|1a|U|652
6CAE|1|1a|A|653
6CAE|1|1a|G|654
*
6CAE|1|1a|C|754
6CAE|1|1a|G|755

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1h
30S ribosomal protein S8
Chain 1l
30S ribosomal protein S12
Chain 1o
30S ribosomal protein S15
Chain 1q
30S ribosomal protein S17

Coloring options:


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