J3_6CAE_022

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

6CAE|1|1a|A|975, 6CAE|1|1a|G|976, 6CAE|1|1a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CAE_022 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0512

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6CAE|1|1a|U|955
6CAE|1|1a|U|956
6CAE|1|1a|U|957
6CAE|1|1a|A|958
6CAE|1|1a|A|959
6CAE|1|1a|U|960
6CAE|1|1a|U|961
6CAE|1|1a|C|962
*
6CAE|1|1a|G|973
6CAE|1|1a|A|974
6CAE|1|1a|A|975
6CAE|1|1a|G|976
6CAE|1|1a|A|977
6CAE|1|1a|A|978
6CAE|1|1a|C|979
6CAE|1|1a|C|980
6CAE|1|1a|U|981
6CAE|1|1a|U|982
6CAE|1|1a|A|983
6CAE|1|1a|C|984
*
6CAE|1|1a|G|1221
6CAE|1|1a|G|1222
6CAE|1|1a|C|1223
6CAE|1|1a|G|1224
6CAE|1|1a|A|1225

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1j

30S ribosomal protein S10

Chain 1m

30S ribosomal protein S13

Chain 1n

30S ribosomal protein S14 type Z

Chain 1s

30S ribosomal protein S19

Chain 1w

Transfer RNA; tRNA

Chain A

NOSO-95179 antibiotic