3D structure

PDB id
6CAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
6CAE|1|2A|A|2388, 6CAE|1|2A|U|2390, 6CAE|1|2A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CAE_070 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.0549
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6CAE|1|2A|G|2282
6CAE|1|2A|C|2283
6CAE|1|2A|C|2284
*
6CAE|1|2A|G|2384
6CAE|1|2A|C|2385
6CAE|1|2A|C|2386
6CAE|1|2A|U|2387
6CAE|1|2A|A|2388
6CAE|1|2A|G|2389
6CAE|1|2A|U|2390
6CAE|1|2A|G|2391
6CAE|1|2A|A|2392
6CAE|1|2A|A|2393
6CAE|1|2A|C|2394
6CAE|1|2A|C|2395
*
6CAE|1|2A|G|2421
6CAE|1|2A|A|2422
6CAE|1|2A|U|2423
6CAE|1|2A|C|2424
6CAE|1|2A|A|2425
6CAE|1|2A|A|2426
6CAE|1|2A|C|2427

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 21
50S ribosomal protein L28
Chain 26
50S ribosomal protein L33
Chain 28
50S ribosomal protein L35
Chain 2P
50S ribosomal protein L15
Chain 2y
Transfer RNA; tRNA

Coloring options:


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