J3_6CAE_073

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CAE_073 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1683

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6CAE|1|2a|C|990
6CAE|1|2a|U|991
6CAE|1|2a|U|992
6CAE|1|2a|G|993
6CAE|1|2a|A|994
6CAE|1|2a|C|995
6CAE|1|2a|A|996
6CAE|1|2a|U|997
*
6CAE|1|2a|A|1044
6CAE|1|2a|C|1045
6CAE|1|2a|A|1046
6CAE|1|2a|G|1047
*
6CAE|1|2a|C|1210
6CAE|1|2a|U|1211
6CAE|1|2a|U|1212
6CAE|1|2a|A|1213
6CAE|1|2a|C|1214
6CAE|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z

Chain C

NOSO-95179 antibiotic