3D structure

PDB id
6CAP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGG*CUAG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CAP_002 not in the Motif Atlas
Geometric match to J3_4LFB_011
Geometric discrepancy: 0.0799
The information below is about J3_4LFB_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6CAP|1|A|C|586
6CAP|1|A|G|587
6CAP|1|A|G|588
*
6CAP|1|A|C|651
6CAP|1|A|U|652
6CAP|1|A|A|653
6CAP|1|A|G|654
*
6CAP|1|A|C|754
6CAP|1|A|G|755

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:


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