J3_6CAP_018

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAACCC*GGGGUGC*GAGCC

Length

18 nucleotides

Bulged bases

6CAP|1|A|A|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CAP|1|A|G|1003|||A
6CAP|1|A|A|1004
6CAP|1|A|A|1005
6CAP|1|A|C|1006
6CAP|1|A|C|1007
6CAP|1|A|C|1008
*
6CAP|1|A|G|1021
6CAP|1|A|G|1022
6CAP|1|A|G|1023
6CAP|1|A|G|1024
6CAP|1|A|U|1025
6CAP|1|A|G|1026
6CAP|1|A|C|1027
*
6CAP|1|A|G|1034
6CAP|1|A|A|1035
6CAP|1|A|G|1036
6CAP|1|A|C|1037
6CAP|1|A|C|1038

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains