J3_6CFJ_071

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

6CFJ|1|2a|C|48, 6CFJ|1|2a|A|50, 6CFJ|1|2a|A|51, 6CFJ|1|2a|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFJ|1|2a|G|46
6CFJ|1|2a|C|47
6CFJ|1|2a|C|48
6CFJ|1|2a|U|49
6CFJ|1|2a|A|50
6CFJ|1|2a|A|51
6CFJ|1|2a|G|52
*
6CFJ|1|2a|U|359
6CFJ|1|2a|A|360
6CFJ|1|2a|G|361
6CFJ|1|2a|G|362
6CFJ|1|2a|A|363
6CFJ|1|2a|A|364
6CFJ|1|2a|U|365
6CFJ|1|2a|C|366
6CFJ|1|2a|U|367
6CFJ|1|2a|U|368
6CFJ|1|2a|C|369
*
6CFJ|1|2a|G|392
6CFJ|1|2a|A|393
6CFJ|1|2a|G|394
6CFJ|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16