J3_6CFJ_073

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAGG*CCGAAG*CGUUAAG

Length

18 nucleotides

Bulged bases

6CFJ|1|2a|U|871, 6CFJ|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFJ|1|2a|C|826
6CFJ|1|2a|U|827
6CFJ|1|2a|A|828
6CFJ|1|2a|G|829
6CFJ|1|2a|G|830
*
6CFJ|1|2a|C|856
6CFJ|1|2a|C|857
6CFJ|1|2a|G|858
6CFJ|1|2a|A|859
6CFJ|1|2a|A|860
6CFJ|1|2a|G|861
*
6CFJ|1|2a|C|868
6CFJ|1|2a|G|869
6CFJ|1|2a|U|870
6CFJ|1|2a|U|871
6CFJ|1|2a|A|872
6CFJ|1|2a|A|873
6CFJ|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8