J3_6CFK_008

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6CFK|1|1A|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_008 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0329

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6CFK|1|1A|C|1352
6CFK|1|1A|A|1353
6CFK|1|1A|A|1354
6CFK|1|1A|G|1355
*
6CFK|1|1A|C|1651
6CFK|1|1A|G|1652
6CFK|1|1A|C|1653
6CFK|1|1A|A|1654
6CFK|1|1A|A|1655
6CFK|1|1A|A|1656
6CFK|1|1A|C|1657
*
6CFK|1|1A|G|1666
6CFK|1|1A|U|1667
6CFK|1|1A|G|1668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34