J3_6CFK_059
3D structure
- PDB id
- 6CFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGA*UUUAAAG*CACU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6CFK_059 not in the Motif Atlas
- Geometric match to J3_8VTW_042
- Geometric discrepancy: 0.1951
- The information below is about J3_8VTW_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46457.1
- Basepair signature
- cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6CFK|1|1A|A|1100
6CFK|1|1A|G|1101
6CFK|1|1A|G|1102
6CFK|1|1A|A|1103
*
6CFK|1|1A|U|1127
6CFK|1|1A|U|1128
6CFK|1|1A|U|1129
6CFK|1|1A|A|1130
6CFK|1|1A|A|1131
6CFK|1|1A|A|1132
6CFK|1|1A|G|1133
*
6CFK|1|1A|C|1148
6CFK|1|1A|A|1149
6CFK|1|1A|C|1150
6CFK|1|1A|U|1151
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
Coloring options: