3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
6CFK|1|1A|A|2400, 6CFK|1|1A|U|2402, 6CFK|1|1A|A|2438
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CFK_061 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.0579
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6CFK|1|1A|G|2294
6CFK|1|1A|C|2295
6CFK|1|1A|C|2296
*
6CFK|1|1A|G|2396
6CFK|1|1A|C|2397
6CFK|1|1A|C|2398
6CFK|1|1A|U|2399
6CFK|1|1A|A|2400
6CFK|1|1A|G|2401
6CFK|1|1A|U|2402
6CFK|1|1A|G|2403
6CFK|1|1A|A|2404
6CFK|1|1A|A|2405
6CFK|1|1A|C|2406
6CFK|1|1A|C|2407
*
6CFK|1|1A|G|2433
6CFK|1|1A|A|2434
6CFK|1|1A|U|2435
6CFK|1|1A|C|2436
6CFK|1|1A|A|2437
6CFK|1|1A|A|2438
6CFK|1|1A|C|2439

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 10
50S ribosomal protein L27
Chain 11
50S ribosomal protein L28
Chain 16
50S ribosomal protein L33
Chain 18
50S ribosomal protein L35
Chain 1P
50S ribosomal protein L15
Chain 1Z
50S ribosomal protein L25

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.535 s