J3_6CFK_072

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCUUGACAU*ACAG*CUUACGG

Length

20 nucleotides

Bulged bases

6CFK|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|2a|C|989
6CFK|1|2a|C|990
6CFK|1|2a|U|991
6CFK|1|2a|U|992
6CFK|1|2a|G|993
6CFK|1|2a|A|994
6CFK|1|2a|C|995
6CFK|1|2a|A|996
6CFK|1|2a|U|997
*
6CFK|1|2a|A|1044
6CFK|1|2a|C|1045
6CFK|1|2a|A|1046
6CFK|1|2a|G|1047
*
6CFK|1|2a|C|1210
6CFK|1|2a|U|1211
6CFK|1|2a|U|1212
6CFK|1|2a|A|1213
6CFK|1|2a|C|1214
6CFK|1|2a|G|1215
6CFK|1|2a|G|1216

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z