J3_6CFL_006

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFL_006 not in the Motif Atlas

Homologous match to J3_7RQB_006

Geometric discrepancy: 0.1426

The information below is about J3_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|1A|G|1101
6CFL|1|1A|G|1102
6CFL|1|1A|A|1103
*
6CFL|1|1A|U|1127
6CFL|1|1A|U|1128
6CFL|1|1A|U|1129
6CFL|1|1A|A|1130
6CFL|1|1A|A|1131
6CFL|1|1A|A|1132
6CFL|1|1A|G|1133
*
6CFL|1|1A|C|1148
6CFL|1|1A|A|1149
6CFL|1|1A|C|1150

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36