J3_6CFL_033

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

6CFL|1|2A|U|1083, 6CFL|1|2A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2A|G|1055
6CFL|1|2A|G|1056
6CFL|1|2A|A|1057
*
6CFL|1|2A|U|1081
6CFL|1|2A|U|1082
6CFL|1|2A|U|1083
6CFL|1|2A|A|1084
6CFL|1|2A|A|1085
6CFL|1|2A|A|1086
6CFL|1|2A|G|1087
6CFL|1|2A|A|1088
6CFL|1|2A|G|1089
6CFL|1|2A|U|1090
6CFL|1|2A|G|1091
*
6CFL|1|2A|C|1100
6CFL|1|2A|U|1101
6CFL|1|2A|C|1102
6CFL|1|2A|A|1103
6CFL|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16