J3_6CFL_061

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

6CFL|1|1A|A|2400, 6CFL|1|1A|U|2402, 6CFL|1|1A|A|2438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFL_061 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.0564

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6CFL|1|1A|G|2294
6CFL|1|1A|C|2295
6CFL|1|1A|C|2296
*
6CFL|1|1A|G|2396
6CFL|1|1A|C|2397
6CFL|1|1A|C|2398
6CFL|1|1A|U|2399
6CFL|1|1A|A|2400
6CFL|1|1A|G|2401
6CFL|1|1A|U|2402
6CFL|1|1A|G|2403
6CFL|1|1A|A|2404
6CFL|1|1A|A|2405
6CFL|1|1A|C|2406
6CFL|1|1A|C|2407
*
6CFL|1|1A|G|2433
6CFL|1|1A|A|2434
6CFL|1|1A|U|2435
6CFL|1|1A|C|2436
6CFL|1|1A|A|2437
6CFL|1|1A|A|2438
6CFL|1|1A|C|2439

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15

Chain 1Z

50S ribosomal protein L25